Read alignments to edited mRNA cyb

from to

Legend

The edited mRNA is shown in traditional 5'->3' direction. The mapped putative guide RNAs are shown in 3'->5' direction. The nucleotides of the mapped putative guide RNAs are color coded according to the following scheme:

An example of this with an excerpt of an edited mRNA on top and a single putative guide RNA on the bottom looks like this:
ATTATTTTTTTATGTTTTTGTTTCGTTGTATATTTGTTGGTGTTAGTGGTGTTTTTGTTTTTTTATCTT
   TTTTTTTTTTTTTAATATTGTTAGTATATGATCAACTGCAATTACCACAAAAACATATATA

Putative guide RNAs

    1 GTTAAGAATAATGGTTATAAATTTTATATAAATATGTTTCGTTGTAGATTTTTATTATTTTTTTTATTATTTAGAAATTTGTGTTGTCTTTTAATGTCAGGTTGTTTATATAGAATATATGGGGTAGGTTTTAGTTTAGGATTTTTTATAGCATTGCAAATAATTTGTGGAGTGTGTTTAGCTTGATTATTTTTTAGTTGTTTTATTTGTTCAAATTGATATTTTGTATTATTTTTATGAGATTTTGATTTGGGTTTTGTGATAAGAAGTGTACATATATGTTTTACATCTTTATTATATTTACTATTATATATCCATATATTTAAGTCAATAACGTTAATAATATTGTTTGACACACATATATTAGTATGATTTATAGGTTTTATATTGTTTGTATTTATAATAATAATAGCTTTTATAGGATATGTACTGCCTTGTACAATGATGTCATACTGAGGTTTAACGGTGTTTAGTAATATTATAGCAACAGTACCAATTTTAGGTATATGATTATGTTATTGAATTTGGGGAAGTGAATTTATAAACGATTTTACATTATTAAAGTTACATGTATTACATGTGTTATTACCATTTATATTACTAATAATATTAATTTTACATTTATTTTGTCTACATTATTTTATGAGTTCTGATGCATTTTGTGATAGGTTTGCATTTTATTGTGAAAGATTAAGTTTTTGTATGTGGTTTTATTTGAGAGATATGTTTTTAGCATTTTCAATATTATTATGTATGATGTATGTTATATTTATAAATTGGTATTTTGTATTTCATGAGGAATCTTGAGTTATAGTAGATACACTAAAAACATCAGATAAAATATTACCAGAATGATTTTTTTTGTATTTATTCGGTTTTTTAAAGGCAATCCCAGATAAGTTTATGGGTTTGTTTTTAATGGTTATTTTATTATTCTCATTATTTTTATTTATATTGAATTGTATATTATGATTTGTGTATTGTAGAAGTTCATTATTATGATTAACATATTCGTTAATATTATTTTATAGTATATGAATGAGTGGTTTTTTAGCATTATATGTAGTATTAGCATATCCAATATGAATGGAATTACAATACTGAGTATTATTATTATTTTTGTTGATAGTGTGTAGGTTAGATTAGTTTAGA 1152
                                                                                                                                                                                                                                                                                                                                                                          TTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAAT
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                             TTTTTTTTTTTTATCAATAGGAGGGGTAATGAGTCTTTNGNTGTAACNGAAAAAAAA
                                                                                                                                                                             TTTTTTTTTTTTTAATGGAAGTGAAGAATAGATGGAATAAGCGAAACAACAAATAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                       TTTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACANCAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAA
                                                                                                                                                                                                                                                                                                                                                                         TTNTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAANN
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAA
                                                                                                                                                                                                                                                                                                                                                                      TTTTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACAA
                                                                                                                                                                                                                                                                                                                                                                       TTTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACA
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACAA
                                                                                                                                                                                                                                                                                                                                                                             TTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATAC
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCAT
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACAA
                   TTTTTTTTTTATAAGAGTCGTATAAGGTGGTATTTGAGAGTAATAAAAAGAAAA
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAATA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACA
                            TTTTTTTTTTTTATAGGGTGGTATTTGAGAGTAATAAAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAA
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAAC
                                                                                                                                                                                                                                                                                                                                                                         TTTCTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
               TTTTTTTTTTTTTGATGAGNGTCGTACGAGGTGGTATTTGGAGGTAATAAAAAAAAA
                                                                                                                                                                                                                                                                                                                                                                       TTTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                          TTTTTTTTTTTTAATTAAGTGTCTAGGNTGTAGTGTATCATAAAATA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATC
                                                                                                                                                                                TTTTTTTTTTAATGGAAGNGAAGAATAGATGGAATAAGCGAAGCAACAAATATATA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAN
                                                                                                                                                                                                                                                                                                                                                                              TTTTTTTTAATTANGTGTCTAGGATGTAGTGTATCATAAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGANGTAGTGTATCATAAAATACAACAA
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAAC
                      TTTTTTTTTTAGAGTCGTATNGGGTGGTATTTGAGAGTAATAAAAAAAAAA
                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCACTA
                           TTTTTTTTTTTGTACGAGGTGGTATTTGGAGGTAATAA
                                                                                                                                                                                                                                                                                                                                                                             TTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAA
               TTTTTTTTTTTTTGATAAGAGTCGTATAGGGTGGTATTTGAGAGTAATAAAAAAAAAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACAA
                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAA
                TTTTTTTTTTTTGATAAGAGTCGTATAGGGNGGTATTTGAGAGTAATAAAAAAAAAACT
                                                                                                                                                                                                                                                                                                                                                                            TTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA
                                                                                                                                                                                                                                                                                                                                                                              TTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACAA
                                                                                                                                                                                                                                                                                                                                                                      TTTTTTTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACAA
                                                                                                                                                                                                                                                                                                                                                                           TTTTTTTTTTTAATTAAGTGTCTAGGATGTAGTGTATCATAAAATACAACA