Welcome to the RNA protein binding prediction server

Submission information

Please enter a name for your submission (mandatory):

Please select a single stranded RNA binding protein -- select a protein -- HuR U2AF2 KHDRBS3 RBFOX1 (150mM NaCl) .

Sequence (up to 250 bases):

You may input a sequence of the bases 'G', 'C', 'A', 'T', and 'U' (upper or lower case). All other characters including spaces and line breaks are ignored.

If you make use of data generated on this server in your own publications, please do not forget to cite the manuscript:

Yi-Hsuan Lin, Jeffrey Gaither, and Ralf Bundschuh, RBPBind: Quantitative prediction of Protein-RNA Interactions

To download the source code underlying this server go here.

For questions and/or comments please send an email to rnabind@bioserv.mps.ohio-state.edu.

This includes suggestions for new proteins to add, ideally accompanied by a reference for their RNACompete or RNA Bind-n-Seq data and one or a few references on independently determined absolute binding affinities for specific RNA molecules.